MM build on Mac

classic Classic list List threaded Threaded
8 messages Options
Reply | Threaded
Open this post in threaded view
|

MM build on Mac

T1000

 



Dear all,

 

I am try to build Micro Manager on Mac os.  I am getting following error while ruinng make. do you know what I need to do to fix the issue?

 

mm/_micromanager/mmstudio/src/org/micromanager/acquisition/OMEMetadata.java:27: error: package loci.common.services does not exist

 

Thanks in advance.

 





_______________________________________________
micro-manager-general mailing list
[hidden email]
https://lists.sourceforge.net/lists/listinfo/micro-manager-general
Reply | Threaded
Open this post in threaded view
|

Re: MM build on Mac

Micro-Manager mailing list
I would like on a Mac too.  Let me know how you make out..

Stephen Arpie
203-675-9010
PO Box 230
Guilford, CT 06437





On May 7, 2019, at 2:37 PM, [hidden email] wrote:

 



Dear all,

 

I am try to build Micro Manager on Mac os.  I am getting following error while ruinng make. do you know what I need to do to fix the issue?

 

mm/_micromanager/mmstudio/src/org/micromanager/acquisition/OMEMetadata.java:27: error: package loci.common.services does not exist

 

Thanks in advance.

 



_______________________________________________
micro-manager-general mailing list
[hidden email]
https://lists.sourceforge.net/lists/listinfo/micro-manager-general



_______________________________________________
micro-manager-general mailing list
[hidden email]
https://lists.sourceforge.net/lists/listinfo/micro-manager-general
Reply | Threaded
Open this post in threaded view
|

Re: MM build on Mac

Stuurman, Nico
In reply to this post by T1000
Hi Ravi,

 


I am try to build Micro Manager on Mac os.  I am getting following error while ruinng make. do you know what I need to do to fix the issue?

 

mm/_micromanager/mmstudio/src/org/micromanager/acquisition/OMEMetadata.java:27: error: package loci.common.services does not exist

 



Did you run "make fetchdeps" before running make?

Best,

Nico




_______________________________________________
micro-manager-general mailing list
[hidden email]
https://lists.sourceforge.net/lists/listinfo/micro-manager-general
Reply | Threaded
Open this post in threaded view
|

Re: MM build on Mac

T1000
In reply to this post by T1000

Hi Nico,

 

yes.  to be sure I have done once more.  These are some points not found.

 

[ivy:resolve]       -- artifact org.micromanager#jxinput;0.8!jxinput.jar:
[ivy:resolve]       /Users/user1/Desktop/mm/3rdparty/classext/jxinput.jar
[ivy:resolve]         ::::::::::::::::::::::::::::::::::::::::::::::
[ivy:resolve]         ::          UNRESOLVED DEPENDENCIES         ::
[ivy:resolve]         ::::::::::::::::::::::::::::::::::::::::::::::
[ivy:resolve]         :: ome#formats-api;5.1.1: not found
[ivy:resolve]         :: ome#formats-common;5.1.1: not found
[ivy:resolve]         :: ome#ome-xml;5.1.1: not found
[ivy:resolve]         :: #clooj;0.2.7: not found
[ivy:resolve]         :: #TSFProto;SVN: not found
[ivy:resolve]         :: sc.fiji#spim_data;2.0.1: not found
[ivy:resolve]         :: net.imglib2#imglib2-realtransform;2.0.0-beta-29: not found
[ivy:resolve]         :: sc.fiji#bigdataviewer-core;2.1.0: not found
[ivy:resolve]         :: #ij3d-bin;: not found
[ivy:resolve]         :: #ima3d_;: not found
[ivy:resolve]         :: #DT1.2;: not found
[ivy:resolve]         :: org.micromanager#jxinput;0.8: not found
[ivy:resolve]         ::::::::::::::::::::::::::::::::::::::::::::::

 

 

but at the end I see

 

BUILD SUCCESSFUL
Total time: 32 seconds

 

So, I asumed it was OK.

 

 

 

/Users/user/Desktop/mm/_micromanager/buildscripts/javabuild.xml:110: Compile failed; see the compiler error output for details.

 

BR

Ravi

 

 

-----Ursprüngliche Nachricht-----
Von: "Stuurman Nico" [[hidden email]]
Gesendet: Mi. 08.05.2019 02:44
An: "Micro-Manager General" [[hidden email]]
Betreff: Re: [micro-manager-general] MM build on Mac

Hi Ravi,

 


I am try to build Micro Manager on Mac os.  I am getting following error while ruinng make. do you know what I need to do to fix the issue?

 

mm/_micromanager/mmstudio/src/org/micromanager/acquisition/OMEMetadata.java:27: error: package loci.common.services does not exist

 



Did you run "make fetchdeps" before running make?

Best,

Nico


-----Ursprüngliche Nachricht Ende-----




_______________________________________________
micro-manager-general mailing list
[hidden email]
https://lists.sourceforge.net/lists/listinfo/micro-manager-general
Reply | Threaded
Open this post in threaded view
|

Re: MM build on Mac

T1000
In reply to this post by T1000

 

Hi Stephen,

 

yes, as soon as I able to build it, I send you.

 

BR

RAvi

 

-----Ursprüngliche Nachricht-----
Von: "Stephen J. Arpie via micro-manager-general" [[hidden email]]
Gesendet: Di. 07.05.2019 20:46
An: "Micro-Manager General" [[hidden email]]
Kopie: "Stephen J. Arpie" [[hidden email]]
Betreff: Re: [micro-manager-general] MM build on Mac

I would like on a Mac too.  Let me know how you make out..

Stephen Arpie
203-675-9010
PO Box 230
Guilford, CT 06437




On May 7, 2019, at 2:37 PM, [hidden email] wrote:

 



Dear all,

 

I am try to build Micro Manager on Mac os.  I am getting following error while ruinng make. do you know what I need to do to fix the issue?

 

mm/_micromanager/mmstudio/src/org/micromanager/acquisition/OMEMetadata.java:27: error: package loci.common.services does not exist

 

Thanks in advance.

 


_______________________________________________
micro-manager-general mailing list
[hidden email]
https://lists.sourceforge.net/lists/listinfo/micro-manager-general

-----Ursprüngliche Nachricht Ende-----




_______________________________________________
micro-manager-general mailing list
[hidden email]
https://lists.sourceforge.net/lists/listinfo/micro-manager-general
Reply | Threaded
Open this post in threaded view
|

Re: MM build on Mac

Stuurman, Nico
In reply to this post by T1000
On 5/7/2019 10:08 PM, [hidden email] wrote:

 

yes.  to be sure I have done once more.  These are some points not found.

 

[ivy:resolve]       -- artifact org.micromanager#jxinput;0.8!jxinput.jar:
[ivy:resolve]       /Users/user1/Desktop/mm/3rdparty/classext/jxinput.jar
[ivy:resolve]         ::::::::::::::::::::::::::::::::::::::::::::::
[ivy:resolve]         ::          UNRESOLVED DEPENDENCIES         ::
[ivy:resolve]         ::::::::::::::::::::::::::::::::::::::::::::::
[ivy:resolve]         :: ome#formats-api;5.1.1: not found
[ivy:resolve]         :: ome#formats-common;5.1.1: not found
[ivy:resolve]         :: ome#ome-xml;5.1.1: not found
[ivy:resolve]         :: #clooj;0.2.7: not found
[ivy:resolve]         :: #TSFProto;SVN: not found
[ivy:resolve]         :: sc.fiji#spim_data;2.0.1: not found
[ivy:resolve]         :: net.imglib2#imglib2-realtransform;2.0.0-beta-29: not found
[ivy:resolve]         :: sc.fiji#bigdataviewer-core;2.1.0: not found
[ivy:resolve]         :: #ij3d-bin;: not found
[ivy:resolve]         :: #ima3d_;: not found
[ivy:resolve]         :: #DT1.2;: not found
[ivy:resolve]         :: org.micromanager#jxinput;0.8: not found
[ivy:resolve]         ::::::::::::::::::::::::::::::::::::::::::::::

 


This is the key problem.  My build finds those dependencies, however, it uses cached versions, so it is possible that the respective sites are down (or worse, have removed these files).  The important ones come from the imagej.net site.  I do not currently have time, but will try to find out what is going on this weekend.

Also curious if you have the same problems with 20-gamma (which has "newer" dependencies).

Best,

Nico
 



_______________________________________________
micro-manager-general mailing list
[hidden email]
https://lists.sourceforge.net/lists/listinfo/micro-manager-general
Reply | Threaded
Open this post in threaded view
|

Re: MM build on Mac

T1000
In reply to this post by T1000

Hi Nico,

 

I will check Gama 2.0 later today. and Give you an update.

 

Thanks for your imput BR

Mathi

 

 

-----Ursprüngliche Nachricht-----
Von: "Stuurman Nico" [[hidden email]]
Gesendet: Mi. 08.05.2019 21:02
An: "Micro-Manager General" [[hidden email]]
Betreff: Re: [micro-manager-general] MM build on Mac

On 5/7/2019 10:08 PM, ssnet@... wrote:

 

yes.  to be sure I have done once more.  These are some points not found.

 

[ivy:resolve]       -- artifact org.micromanager#jxinput;0.8!jxinput.jar:
[ivy:resolve]       /Users/user1/Desktop/mm/3rdparty/classext/jxinput.jar
[ivy:resolve]         ::::::::::::::::::::::::::::::::::::::::::::::
[ivy:resolve]         ::          UNRESOLVED DEPENDENCIES         ::
[ivy:resolve]         ::::::::::::::::::::::::::::::::::::::::::::::
[ivy:resolve]         :: ome#formats-api;5.1.1: not found
[ivy:resolve]         :: ome#formats-common;5.1.1: not found
[ivy:resolve]         :: ome#ome-xml;5.1.1: not found
[ivy:resolve]         :: #clooj;0.2.7: not found
[ivy:resolve]         :: #TSFProto;SVN: not found
[ivy:resolve]         :: sc.fiji#spim_data;2.0.1: not found
[ivy:resolve]         :: net.imglib2#imglib2-realtransform;2.0.0-beta-29: not found
[ivy:resolve]         :: sc.fiji#bigdataviewer-core;2.1.0: not found
[ivy:resolve]         :: #ij3d-bin;: not found
[ivy:resolve]         :: #ima3d_;: not found
[ivy:resolve]         :: #DT1.2;: not found
[ivy:resolve]         :: org.micromanager#jxinput;0.8: not found
[ivy:resolve]         ::::::::::::::::::::::::::::::::::::::::::::::

 


This is the key problem.  My build finds those dependencies, however, it uses cached versions, so it is possible that the respective sites are down (or worse, have removed these files).  The important ones come from the imagej.net site.  I do not currently have time, but will try to find out what is going on this weekend.

Also curious if you have the same problems with 20-gamma (which has "newer" dependencies).

Best,

Nico
 

-----Ursprüngliche Nachricht Ende-----




_______________________________________________
micro-manager-general mailing list
[hidden email]
https://lists.sourceforge.net/lists/listinfo/micro-manager-general
Reply | Threaded
Open this post in threaded view
|

Re: MM build on Mac

T1000
In reply to this post by T1000

HI Nico,

 

I have tried 2.0Gama.

 

I am getting following error..

 

 

[mm-javac] /Users/ravi/mmNew/2.0Gama/mmstudio/src/main/java/org/micromanager/data/internal/SciFIODataProvider.java:5: error: package io.scif does not exist
 [mm-javac] /Users/ravi/mmNew/2.0Gama/mmstudio/src/main/java/org/micromanager/data/internal/SciFIODataProvider.java:6: error: package io.scif does not exist
 [mm-javac] /Users/ravi/mmNew/2.0Gama/mmstudio/src/main/java/org/micromanager/data/internal/SciFIODataProvider.java:7: error: package io.scif does not exist
 [mm-javac] /Users/ravi/mmNew/2.0Gama/mmstudio/src/main/java/org/micromanager/data/internal/SciFIODataProvider.java:8: error: package io.scif does not exist
 [mm-javac] /Users/ravi/mmNew/2.0Gama/mmstudio/src/main/java/org/micromanager/data/internal/SciFIODataProvider.java:9: error: package io.scif does not exist
 [mm-javac] /Users/ravi/mmNew/2.0Gama/mmstudio/src/main/java/org/micromanager/data/internal/SciFIODataProvider.java:10: error: package io.scif.util does not exist
 [mm-javac] /Users/ravi/mmNew/2.0Gama/mmstudio/src/main/java/org/micromanager/data/internal/SciFIODataProvider.java:15: error: package net.imagej.axis does not exist
 [mm-javac] /Users/ravi/mmNew/2.0Gama/mmstudio/src/main/java/org/micromanager/data/internal/SciFIODataProvider.java:16: error: package net.imagej.axis does not exist
 [mm-javac] /Users/ravi/mmNew/2.0Gama/mmstudio/src/main/java/org/micromanager/data/internal/SciFIODataProvider.java:32: error: cannot find symbol
 [mm-javac] /Users/ravi/mmNew/2.0Gama/mmstudio/src/main/java/org/micromanager/data/internal/SciFIODataProvider.java:33: error: cannot find symbol
 [mm-javac] /Users/ravi/mmNew/2.0Gama/mmstudio/src/main/java/org/micromanager/data/internal/SciFIODataProvider.java:34: error: cannot find symbol
 [mm-javac] /Users/ravi/mmNew/2.0Gama/mmstudio/src/main/java/org/micromanager/data/internal/SciFIODataProvider.java:122: error: cannot find symbol
 [mm-javac] /Users/ravi/mmNew/2.0Gama/mmstudio/src/main/java/org/micromanager/data/internal/SciFIODataProvider.java:189: error: cannot find symbol
 [mm-javac] /Users/ravi/mmNew/2.0Gama/mmstudio/src/main/java/org/micromanager/data/internal/SciFIODataProvider.java:196: error: cannot find symbol
 [mm-javac] /Users/ravi/mmNew/2.0Gama/mmstudio/src/main/java/org/micromanager/data/internal/SciFIODataProvider.java:202: error: cannot find symbol
 [mm-javac] /Users/ravi/mmNew/2.0Gama/mmstudio/src/main/java/org/micromanager/data/internal/SciFIODataProvider.java:234: error: cannot find symbol
 [mm-javac] /Users/ravi/mmNew/2.0Gama/mmstudio/src/main/java/org/micromanager/data/internal/SciFIODataProvider.java:338: error: cannot find symbol
 [mm-javac] /Users/ravi/mmNew/2.0Gama/mmstudio/src/main/java/org/micromanager/data/internal/multipagetiff/OMEMetadata.java:31: error: package loci.common does not exist
 [mm-javac] /Users/ravi/mmNew/2.0Gama/mmstudio/src/main/java/org/micromanager/data/internal/multipagetiff/OMEMetadata.java:32: error: package loci.common.services does not exist
 [mm-javac] /Users/ravi/mmNew/2.0Gama/mmstudio/src/main/java/org/micromanager/data/internal/multipagetiff/OMEMetadata.java:33: error: package loci.common.services does not exist
 [mm-javac] /Users/ravi/mmNew/2.0Gama/mmstudio/src/main/java/org/micromanager/data/internal/multipagetiff/OMEMetadata.java:34: error: package loci.common.services does not exist
 [mm-javac] /Users/ravi/mmNew/2.0Gama/mmstudio/src/main/java/org/micromanager/data/internal/multipagetiff/OMEMetadata.java:38: error: package ome.units does not exist
 [mm-javac] /Users/ravi/mmNew/2.0Gama/mmstudio/src/main/java/org/micromanager/data/internal/multipagetiff/OMEMetadata.java:39: error: package ome.units.quantity does not exist
 [mm-javac] /Users/ravi/mmNew/2.0Gama/mmstudio/src/main/java/org/micromanager/data/internal/multipagetiff/OMEMetadata.java:40: error: package ome.units.quantity does not exist
 [mm-javac] error: java.nio.file.NoSuchFileException: /Users/ravi/mmNew/2.0Gama/mmstudio/build/META-INF/json/org.scijava.plugin.Plugin
 [mm-javac] 25 errors

BUILD FAILED
/Users/ravi/mmNew/2.0Gama/buildscripts/javabuild.xml:112: Compile failed; see the compiler error output for details.

Total time: 3 seconds
make[1]: *** [MMJ_.jar] Error 1
make: *** [all-recursive] Error 1

 

 

BR

Ravi

 

-----Ursprüngliche Nachricht-----
Von: [hidden email]
Gesendet: Do. 09.05.2019 06:38
An: "Micro-Manager General" [[hidden email]], "Micro-Manager General" [[hidden email]]
Betreff: Re: [micro-manager-general] MM build on Mac

Hi Nico,

 

I will check Gama 2.0 later today. and Give you an update.

 

Thanks for your imput BR

Mathi

 

 

-----Ursprüngliche Nachricht-----
Von: "Stuurman Nico" [[hidden email]]
Gesendet: Mi. 08.05.2019 21:02
An: "Micro-Manager General" [[hidden email]]
Betreff: Re: [micro-manager-general] MM build on Mac

On 5/7/2019 10:08 PM, ssnet@... wrote:

 

yes.  to be sure I have done once more.  These are some points not found.

 

[ivy:resolve]       -- artifact org.micromanager#jxinput;0.8!jxinput.jar:
[ivy:resolve]       /Users/user1/Desktop/mm/3rdparty/classext/jxinput.jar
[ivy:resolve]         ::::::::::::::::::::::::::::::::::::::::::::::
[ivy:resolve]         ::          UNRESOLVED DEPENDENCIES         ::
[ivy:resolve]         ::::::::::::::::::::::::::::::::::::::::::::::
[ivy:resolve]         :: ome#formats-api;5.1.1: not found
[ivy:resolve]         :: ome#formats-common;5.1.1: not found
[ivy:resolve]         :: ome#ome-xml;5.1.1: not found
[ivy:resolve]         :: #clooj;0.2.7: not found
[ivy:resolve]         :: #TSFProto;SVN: not found
[ivy:resolve]         :: sc.fiji#spim_data;2.0.1: not found
[ivy:resolve]         :: net.imglib2#imglib2-realtransform;2.0.0-beta-29: not found
[ivy:resolve]         :: sc.fiji#bigdataviewer-core;2.1.0: not found
[ivy:resolve]         :: #ij3d-bin;: not found
[ivy:resolve]         :: #ima3d_;: not found
[ivy:resolve]         :: #DT1.2;: not found
[ivy:resolve]         :: org.micromanager#jxinput;0.8: not found
[ivy:resolve]         ::::::::::::::::::::::::::::::::::::::::::::::

 


This is the key problem.  My build finds those dependencies, however, it uses cached versions, so it is possible that the respective sites are down (or worse, have removed these files).  The important ones come from the imagej.net site.  I do not currently have time, but will try to find out what is going on this weekend.

Also curious if you have the same problems with 20-gamma (which has "newer" dependencies).

Best,

Nico
 

-----Ursprüngliche Nachricht Ende-----


-----Ursprüngliche Nachricht Ende-----




_______________________________________________
micro-manager-general mailing list
[hidden email]
https://lists.sourceforge.net/lists/listinfo/micro-manager-general