Dear Roy,
Thanks for your answer.
two questions:
1. so what are the disadvantages of living within matlab? is it that I
will have to rebuild the ready made GUI (and programs) of micromanager?
2. I dont understand what you meant when you said: I can use the matlab
compiler or use batch mode. where would i run these options from? (as
you might be able to see, I am quite bad with computers).
again many thanks
JD
(PS. Arthur thank you too).
Roy Wollman wrote:
> Dear Jon,
>
> Matlab / micromanager connection is good but not totally transparent,
> my advice will be that unless you want to "live" within matlab and use
> its own memory management etc. it would be best to stay within the
> world of java. If you could write you calculation as a java object you
> should be able to just call them from a beanshell script, pretty close
> to being an extra "button". There are ways to even call matlab from
> java (
http://www.cs.virginia.edu/~whitehouse/matlab/JavaMatlab.html)
> but I never tried that myself. You could of course compile you matlab
> code if you have the matlab compiler of call matlab in batch mode to
> do the calculation for you (but pay the price of latency and
> overhead). Basically it all depends on how sophisticated your
> calculation is...
>
> Best,
> Roy
>
> On Tue, Sep 8, 2009 at 2:25 AM, jon donner<
[hidden email]> wrote:
>
>> Dear Micro Manager Mailing list,
>>
>> So I am a newcommer to micro manager, and realy need your help.
>> I would like to push a button in micro manager that does the following:
>> the camera takes a picture. the picture goes to matlab and I do some
>> calculations in matlab, and then I see the result in micro manager. Is
>> this possible or will I be better of doing the whole thing from Matlab ,
>> (but then I forfit a lot of the ready made functions that exist in
>> micromanager right? and need to rebuild the GUI?). I could also do these
>> calculations in Java, would this approach allow me to show the results
>> in an easier manner in micro manager? Do you know anything about how I
>> will get the fastest results?
>>
>> Many Thanks,
>>
>> JD
>>
>>
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