Re: Allow Limited User to use Micro-Manager

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Re: Allow Limited User to use Micro-Manager

Kate Luby-Phelps
The answer as to how to allow Limited Users in Windows XP Pro to run Micro-Manager without giving them administrative priveleges turns out to be using regedit to change the permissions on the micromanager key in the JavaSoft tree of the HKLM tree in the registry. I changed the permissions for Users to match those of the PowerUser group and voilá!

Kate

Kate Luby-Phelps, Ph.D.

Director, Live Cell Imaging Core Facility

Professor, Dept. of Cell Biology

UT Southwestern Medical Center

5323 Harry Hines Blvd. 

Room K2.220

Dallas, TX 75390-9039


T: 214-648-0429

F: 214-648-8694

Reply to: [hidden email]

Website: http://www4.utsouthwestern.edu/LiveCellImagingFacility/home.html




On May 2, 2010, at 5:36 PM, [hidden email] wrote:

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Today's Topics:

  1. Window (Antonin Hoel)
  2. Re: Window (Arthur D. Edelstein)
  3. Re: Window (Nico Stuurman)
  4. Re : Re: Window (Antonin Hoel)
  5. Re: Re : Re: Window (Nico Stuurman)
  6. Re: "real-time" stitching of snap shots (Damon Poburko)
  7. Re: "real-time" stitching of snap shots (Arthur D. Edelstein)
  8. Re: Remote Desktop (Kate Phelps)


----------------------------------------------------------------------

Message: 1
Date: Fri, 30 Apr 2010 07:22:09 -0700 (PDT)
From: Antonin Hoel <[hidden email]>
Subject: [micro-manager-general] Window
To: [hidden email]
Message-ID: <[hidden email]>
Content-Type: text/plain; charset=us-ascii


I have just started using Micromanager, and it looks like a wonderfull tool.
Thanks for developping it!
I have however a small window problem. I would like to use the multiple
position acquisition option, but when I open the position list window, I am
unable to check the axis: the checkboxes are cut by the bottom of the
window. When I try to enlarge the window, the space for the position list
get bigger, but the checkboxes for the axis remain outside of the window.

I coudn't find out how to deal with this. Any help would be welcome.

I just downloaded the last version of Micromanager, the one that allow to
use the Marzhauser tango (I found the link on this forum). I am using it on
windows xp.

Best regards,
Antonin
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------------------------------

Message: 2
Date: Fri, 30 Apr 2010 08:19:21 -0700
From: "Arthur D. Edelstein" <[hidden email]>
Subject: Re: [micro-manager-general] Window
To: Micro-Manager General
<[hidden email]>
Message-ID:
<[hidden email]>
Content-Type: text/plain; charset=ISO-8859-1

Hi Antonin,

Thanks for reporting the bug you have seen in the position list
window. What operating system and version of the operating system are
you using?

Best regards,
Arthur



On Fri, Apr 30, 2010 at 7:22 AM, Antonin Hoel <[hidden email]> wrote:

I have just started using Micromanager, and it looks like a wonderfull tool.
Thanks for developping it!
I have however a small window problem. I would like to use the multiple
position acquisition option, but when I open the position list window, I am
unable to check the axis: the checkboxes are cut by the bottom of the
window. When I try to enlarge the window, the space for the position list
get bigger, but the checkboxes for the axis remain outside of the window.

I coudn't find out how to deal with this. Any help would be welcome.

I just downloaded the last version of Micromanager, the one that allow to
use the Marzhauser tango (I found the link on this forum). I am using it on
windows xp.

Best regards,
Antonin
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------------------------------

Message: 3
Date: Fri, 30 Apr 2010 08:25:22 -0700
From: Nico Stuurman <[hidden email]>
Subject: Re: [micro-manager-general] Window
To: Micro-Manager General
<[hidden email]>
Message-ID: <[hidden email]>
Content-Type: text/plain; charset=US-ASCII; format=flowed; delsp=yes

Hi Antonin,

I have however a small window problem. I would like to use the  
multiple
position acquisition option, but when I open the position list  
window, I am
unable to check the axis: the checkboxes are cut by the bottom of the
window. When I try to enlarge the window, the space for the position  
list
get bigger, but the checkboxes for the axis remain outside of the  
window.

Could you send a screenshot of that window to [hidden email]?

The size of the bottom pane depends on the number of stages in your  
system, but is otherwise hardcoded.  My suspicion is that your system  
uses a font with a different size (large fonts?) or there might be an  
issue with you locale.

Best,

Nico





------------------------------

Message: 4
Date: Fri, 30 Apr 2010 08:45:18 -0700 (PDT)
From: Antonin Hoel <[hidden email]>
Subject: [micro-manager-general] Re : Re: Window
To: [hidden email]
Message-ID: <[hidden email]>
Content-Type: text/plain; charset="utf-8"


Thanks for your very quick reply, &nbsp; You will find attached a screenshot of the window. I will try to see if I can change the font. I just&nbsp;tryed on another computer (still windows xp, service pack 3, french)&nbsp;and had the same problem. &nbsp; Best regards, Antonin ----- Message d'origine ----- De: "Nico Stuurman-4 [via Micro-Manager]" &lt;[hidden email]&gt; Date: Vendredi, 30 Avril 2010, 17:26 Objet: Re: Window ?: Antonin Hoel &lt;[hidden email]&gt; &gt; &gt; &gt; Hi Antonin, &gt; &gt; &gt; &gt; I have however a small window problem. I would like to use &gt; the &nbsp; &gt; &gt; &gt; multiple &gt; &gt; &gt; position acquisition option, but when I open the position &gt; list &nbsp; &gt; &gt; &gt; window, I am &gt; &gt; &gt; unable to check the axis: the checkboxes are cut by the &gt; bottom of the &gt; &gt; &gt; window. When I try to enlarge the window, the space for the &gt; position &nbsp; &gt; &gt; &gt; list &gt; &gt; &gt; get bigger, but the checkboxes for the axis remain outside &gt; of the &nbsp; &gt; &gt; &gt; window. &gt; &gt; &gt; Could you send a screenshot of that window to [hidden email]? &gt; &gt; &gt; The size of the bottom pane depends on the number of stages in &gt; your &nbsp; &gt; &gt; system, but is otherwise hardcoded. &nbsp;My suspicion is that &gt; your system &nbsp; &gt; &gt; uses a font with a different size (large fonts?) or there might &gt; be an &nbsp; &gt; &gt; issue with you locale. &gt; &gt; &gt; Best, &gt; &gt; &gt; Nico &gt; &gt; &gt; &gt; &gt; ----------------------------------------------------------------- &gt; ------------- &gt; &gt; _______________________________________________ &gt; &gt; micro-manager-general mailing list &gt; &gt; [hidden email] &gt; &gt; https://lists.sourceforge.net/lists/listinfo/micro-manager-general &gt; &gt; &gt;

&gt;
&gt; View message @ http://micro-manager.3463995.n2.nabble.com/Window-tp4985905p4986287.html &gt; &gt; &gt; To unsubscribe from Window, click here. &gt; &gt; &gt;


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Message: 5
Date: Fri, 30 Apr 2010 09:44:14 -0700
From: Nico Stuurman <[hidden email]>
Subject: Re: [micro-manager-general] Re : Re: Window
To: Micro-Manager General
<[hidden email]>
Message-ID: <[hidden email]>
Content-Type: text/plain; charset=us-ascii

Hi Antonin,

Thanks for your very quick reply,

You will find attached a screenshot of the window.

Mine looks the same if I use a configuration that does not use any stage.  Are you sure that you have a Z-stage or XY-stage included in your configuration file?  If so, can you send us your configuration file?  You can also test with the demo configuration file (which includes a Z and XY stage).

Best,

Nico





------------------------------

Message: 6
Date: Fri, 30 Apr 2010 14:40:14 -0700
From: Damon Poburko <[hidden email]>
Subject: Re: [micro-manager-general] "real-time" stitching of snap
shots
To: Micro-Manager General
<[hidden email]>
Message-ID: <[hidden email]>
Content-Type: text/plain; charset=ISO-8859-1; format=flowed

Hi All,

  Just wondering if anyone has tried to incorporate any kind of
"real-time" stitching of snapshots from micro-manager. I was thinking of
trying to get micro-manager to hand-off snap shots to TrakEM2 or some
other stitching plugin to generate a map or history of the regions that
I have visited while scrolling around my coverslips. As long as snap
shots have a decent amount of overlap, it seems like it wouldn't take to
long to register neighbouring images as they're acquired. I just wanted
to see if anyone had alrady done this and was willing to share their
scripts.

Cheers,
Damon



------------------------------

Message: 7
Date: Fri, 30 Apr 2010 15:30:26 -0700
From: "Arthur D. Edelstein" <[hidden email]>
Subject: Re: [micro-manager-general] "real-time" stitching of snap
shots
To: Micro-Manager General
<[hidden email]>
Message-ID:
<[hidden email]>
Content-Type: text/plain; charset=ISO-8859-1

Hi Damon,

I have written a plugin for Micro-Manager (tentatively called the
Surveyor) that does something very similar to what you are suggesting.
We are going to release it with the next Micro-Manager build, which
should be soon.

Best regards,
Arthur



On Fri, Apr 30, 2010 at 2:40 PM, Damon Poburko <[hidden email]> wrote:
Hi All,

? Just wondering if anyone has tried to incorporate any kind of
"real-time" stitching of snapshots from micro-manager. I was thinking of
trying to get micro-manager to hand-off snap shots to TrakEM2 or some
other stitching plugin to generate a map or history of the regions that
I have visited while scrolling around my coverslips. As long as snap
shots have a decent amount of overlap, it seems like it wouldn't take to
long to register neighbouring images as they're acquired. I just wanted
to see if anyone had alrady done this and was willing to share their
scripts.

Cheers,
Damon

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------------------------------

Message: 8
Date: Sun, 2 May 2010 17:36:03 -0500
From: Kate Phelps <[hidden email]>
Subject: Re: [micro-manager-general] Remote Desktop
To: [hidden email]
Message-ID: <[hidden email]>
Content-Type: text/plain; charset=ISO-8859-1; format=flowed; delsp=yes

Hi Arthur and Karl,

Thanks for answering. I think it is a problem with that particular  
copy of ?Manager. I reinstalled the same build in a different folder  
and it works fine.

Now I will get back to work on figuring out how to let limited users  
use it locally.

Kate

On Apr 30, 2010, at 10:13 AM, [hidden email]
 wrote:

Send micro-manager-general mailing list submissions to
[hidden email]

To subscribe or unsubscribe via the World Wide Web, visit
https://lists.sourceforge.net/lists/listinfo/micro-manager-general
or, via email, send a message with subject or body 'help' to
[hidden email]

You can reach the person managing the list at
[hidden email]

When replying, please edit your Subject line so it is more specific
than "Re: Contents of micro-manager-general digest..."


Today's Topics:

 1. Re: shutter timing out during multi-D acquistion (Nico Stuurman)
 2. shutter timing out during multi-D acquistion
    ([hidden email]) ([hidden email])
 3. Remote Desktop (Kate Phelps)
 4. Re: Remote Desktop (Arthur D. Edelstein)
 5. Re: Remote Desktop (Karl Bellve)
 6. Re: QuickPALM - 2D and 3D real-time PALM/STORM analysis with
    ImageJ and uManager (Arthur D. Edelstein)


----------------------------------------------------------------------

Message: 1
Date: Thu, 29 Apr 2010 16:23:28 -0700
From: Nico Stuurman <[hidden email]>
Subject: Re: [micro-manager-general] shutter timing out during multi-D
acquistion
To: Micro-Manager General
<[hidden email]>
Message-ID: <[hidden email]>
Content-Type: text/plain; charset=us-ascii

Hi Kueh,

I am using Micromanager to control two independent Lambda shutter
controllers (Lambda SC), one for brightfield illumination and the  
other
for fluorescence illumination.  Both shutters work fine when I snap
images or stream live images onto the computer.  However, when I use
multi-D acquisition, and take only fluorescence images , the  
brightfield
shutter generates a time out error (Device Time Out, Error Code: 25)
after a few images are taken.  This problem is alleviated if I  
include
the brightfield in my multi-D acquistion.  Any idea what might be  
going
on?

Some ideas...  There is a global flag "g_Busy" in the Sutter  
adapter.  When Micro-Manager changes the state of your fluorescence  
shutter, this flag is set to true.  If it then checks if the  
Brightfield shutter is Busy, this shutter will inadvertently report  
that it is Busy.  The code appears to make the assumption that all  
the Sutter devices will be behind the same controller (and the same  
serial port), which was a fair assumption at the time the code was  
written.  I have an idea for a fix but will need a bit of time to  
implement that fix.  It would be very helpful for me to have remote  
access to your computer for testing.  Could you send me an email  
(off-list) to let me know if that is alright with you?

Best,

Nico


------------------------------

Message: 2
Date: Thu, 29 Apr 2010 17:13:54 -0700 (PDT)
From: [hidden email]
Subject: [micro-manager-general] shutter timing out during multi-D
acquistion ([hidden email])
To: [hidden email]
Message-ID:
<[hidden email]>
Content-Type: text/plain;charset=iso-8859-1

Hi Serdar,

Thanks for your suggestion!  Unfortunately, when I tried that, the
shutters no longer opened when I was doing the multi-D acquisition  
(though
images were being taken).

Best,
Kueh



======================
Date: Thu, 29 Apr 2010 14:43:17 -0400
From: "U. Serdar Tulu" <[hidden email]>
Subject: Re: [micro-manager-general] shutter timing out during multi-D
      acquistion
To: "Micro-Manager General"


Hi Kueh,

I will have a very simple suggestion to try out, and I am not sure  
if it
will work. Try unclicking auto-shutter box when you do multi-D  
imaging. Let
us know if that works.

Good luck

Serdar





------------------------------

Message: 3
Date: Thu, 29 Apr 2010 22:20:18 -0500
From: Kate Phelps <[hidden email]>
Subject: [micro-manager-general] Remote Desktop
To: [hidden email]
Message-ID: <[hidden email]>
Content-Type: text/plain; charset="iso-8859-1"

Is there a reason why I can't run ?Manager in a Remote Desktop
session? All my other programs run fine.

Also, in Windows XP Professional (32-bit) users with limited accounts
can't run ?Manager. Can this be fixed by making them Power Users or by
specifically giving each user Full Control over the ?Manager  
executable?

I was trying to fix this by Remote Desktop tonight and couldn't get
the program to run even from my admin account (although I know it runs
for all Admins locally).

Thanks

Kate


Kate Luby-Phelps, Ph.D.
Director, Live Cell Imaging Core Facility
Professor, Dept. of Cell Biology
UT Southwestern Medical Center
5323 Harry Hines Blvd.
Dallas, TX 75390-9039

T: 214-648-0429
F: 214-648-8694
Reply to: [hidden email]
Website: http://www4.utsouthwestern.edu/LiveCellImagingFacility/home.htm



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Message: 4
Date: Thu, 29 Apr 2010 21:16:05 -0700
From: "Arthur D. Edelstein" <[hidden email]>
Subject: Re: [micro-manager-general] Remote Desktop
To: Micro-Manager General
<[hidden email]>
Message-ID:
<[hidden email]>
Content-Type: text/plain; charset=ISO-8859-1

Hi Kate,

I'm not sure about the limited accounts issue, but I run Micro-Manager
over Remote Desktop frequently. What problems are you seeing in each
case?

Best regards,
Arthur



On Thu, Apr 29, 2010 at 8:20 PM, Kate Phelps <[hidden email]>  
wrote:
Is there a reason why I can't run ?Manager in a Remote Desktop  
session? All
my other programs run fine.
Also, in Windows XP Professional (32-bit) users with limited  
accounts can't
run ?Manager. Can this be fixed by making them Power Users or by
specifically giving each user Full Control over the ?Manager  
executable?
I was trying to fix this by Remote Desktop tonight and couldn't get  
the
program to run even from my admin account (although I know it runs  
for all
Admins locally).
Thanks
Kate

Kate Luby-Phelps, Ph.D.

Director, Live Cell Imaging Core Facility

Professor, Dept. of Cell Biology

UT Southwestern Medical Center

5323 Harry Hines Blvd.

Dallas, TX 75390-9039

T: 214-648-0429

F: 214-648-8694

Reply to: [hidden email]

Website: http://www4.utsouthwestern.edu/LiveCellImagingFacility/home.htm



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------------------------------

Message: 5
Date: Fri, 30 Apr 2010 08:26:37 -0400
From: Karl Bellve <[hidden email]>
Subject: Re: [micro-manager-general] Remote Desktop
To: Micro-Manager General
<[hidden email]>
Message-ID:
<[hidden email]>
Content-Type: text/plain; charset="iso-8859-1"

I have run micro-manager via Remote Desktop.

You need to be careful and make sure the serial ports are not from  
your
local desktop.

On Thu, Apr 29, 2010 at 11:20 PM, Kate Phelps <[hidden email]>  
wrote:

Is there a reason why I can't run ?Manager in a Remote Desktop  
session? All
my other programs run fine.

Also, in Windows XP Professional (32-bit) users with limited  
accounts can't
run ?Manager. Can this be fixed by making them Power Users or by
specifically giving each user Full Control over the ?Manager  
executable?

I was trying to fix this by Remote Desktop tonight and couldn't get  
the
program to run even from my admin account (although I know it runs  
for all
Admins locally).

Thanks

Kate


Kate Luby-Phelps, Ph.D.

Director, Live Cell Imaging Core Facility

Professor, Dept. of Cell Biology

UT Southwestern Medical Center

5323 Harry Hines Blvd.

Dallas, TX 75390-9039


T: 214-648-0429

F: 214-648-8694

Reply to: [hidden email]

Website: http://www4.utsouthwestern.edu/LiveCellImagingFacility/home.htm





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--
Cheers,

Karl Bellve
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Message: 6
Date: Fri, 30 Apr 2010 08:13:18 -0700
From: "Arthur D. Edelstein" <[hidden email]>
Subject: Re: [micro-manager-general] QuickPALM - 2D and 3D real-time
PALM/STORM analysis with ImageJ and uManager
To: Micro-Manager General
<[hidden email]>
Message-ID:
<[hidden email]>
Content-Type: text/plain; charset=ISO-8859-1

Hi Ricardo,

Congratulations on your new paper and this very exciting new ImageJ  
plugin!

Best regards,
Arthur



On Thu, Apr 29, 2010 at 10:07 AM, Ricardo Henriques <[hidden email]
wrote:
Dear Colleagues,
I would like to?announce?the release of QuickPALM, an ImageJ plugin  
for
2D/3D PALM/STORM particle detection and rendering that is able to  
process
data in parallel to the acquisition. In our recent Nat Met  
publication
(http://www.nature.com/nmeth/journal/v7/n5/full/nmeth0510-339.html)  
we show
its use with uManager and provide software for the AOTF laser  
control (AA
optoelectronics AOTF or Andor ALC).

For more information check our site -?http://code.google.com/p/quickpalm/
.
Best regards,
Ricardo Henriques
--
Ricardo Henriques
PhD Student
Gene Expression and Biophysics Unit
Institute of Molecular Medicine
Faculty of Medicine, University of Lisbon
Av. Prof. Egas Moniz
1649-028 Lisbon, Portugal
Phone: + 351 217999503, Ext: 47318
Fax: + 351 217999504
E-mail: [hidden email]

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