Saving File Problem

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Saving File Problem

O'Hare, Peter F

Micromanager 1.4.2

 

Problem Saving Files

 

After multidimensional acquisition,  eg 10 positions,  2 channels,    I see the final file on screen,     all looks good, can scroll positons and channels.

 

BUT,  when I press save,    and reopen,  I seem to have only one position in the saved version.    “Saving as”  eg .tif,   does not help

 

 

Can anyone advise

Many thanks

Peter

 

 

Professor P O’Hare

Section of Virology

Faculty of Medicine

Imperial College

London W2 1PG

Tel. 0207 5949517

 



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Re: Saving File Problem

Nico Stuurman-2
Hi Peter,

> Micromanager 1.4.2
>
> Problem Saving Files
>
> After multidimensional acquisition,  eg 10 positions,  2 channels,
>    I see the final file on screen,  all looks good, can scroll
> positons and channels.
>
> BUT,  when I press save,    and reopen,  I seem to have only one
> position in the saved version.   “Saving as”  eg .tif,   does not help
>

1.4.2 is very old.  Try updating to the latest nightly build of 1.4 or
(better) 2.0-gamma
(https://micro-manager.org/wiki/Download_Micro-Manager_Latest_Release).
Hopefully this bug was fixed since the 1.4.2 release in 2011.

Best,

Nico




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Re: Saving File Problem

Nico Stuurman-2
Hi Peter,

> HAving to run old version since Lumenear have not got a driver for Infinity camera,  i asked again. And it is not listed under MMv2.0. I tried.?


That is a real problem, and it would be great if Lumenera would share
the source code for their Device adapter code with us so that you can
use it with any new version of MM.

It does look like Lumenera plugin v. 1.3.0 works with Micro-Manager
1.4.23 1090429, which is a lot newer than 1.4.2 (see
https://www.lumenera.com/support/microscopy/drivers-downloads/micro-manager-plug-in.html),
so you could at least try with that version of MM.

Best,

Nico

>
> Regards
> Peter
>
> Sent remote from Out of Office
>
>> On 26 Feb 2020, at 20:04, Stuurman, Nico <[hidden email]> wrote:
>>
>> Hi Peter,
>>
>>> Micromanager 1.4.2
>>>
>>> Problem Saving Files
>>>
>>> After multidimensional acquisition,  eg 10 positions,  2 channels,
>>>     I see the final file on screen,  all looks good, can scroll
>>> positons and channels.
>>>
>>> BUT,  when I press save,    and reopen,  I seem to have only one
>>> position in the saved version.   “Saving as”  eg .tif,   does not help
>>>
>> 1.4.2 is very old.  Try updating to the latest nightly build of 1.4 or
>> (better) 2.0-gamma
>> (https://urldefense.proofpoint.com/v2/url?u=https-3A__micro-2Dmanager.org_wiki_Download-5FMicro-2DManager-5FLatest-5FRelease&d=DwIGaQ&c=iORugZls2LlYyCAZRB3XLg&r=UwP8SWqih8VHO1LwZpgcx83I4o21yLj6V6QD-25Dt4I&m=myDBf82XcZO30LFVWkNksUF84o59nSfMLgL3weXKuxQ&s=wUAlE-5oVNQ7u-h0m28GJHQgvTeQdD-f1x0_b4xwNf8&e= ).
>> Hopefully this bug was fixed since the 1.4.2 release in 2011.
>>
>> Best,
>>
>> Nico
>>
>>
> .


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