voxel depth not saved

[Sam Lord]

I notice that the x-y pixel size is saved in the "properties" window, but not the voxel depth. When I open my z-stack data in uM, it doesn't remember the z-stack depth information. Is there a simple fix for this?

[Nico Stuurman-4]

On Nov 21, 2011, at 10:38 AM, Sam Lord wrote:

> I notice that the x-y pixel size is saved in the "properties" window, but not the voxel depth. When I open my z-stack data in uM, it doesn't remember the z-stack depth information. Is there a simple fix for this?

In Micro-Manager's Histogram panel, click on Metadata and look for an item called something like "z-step-um".  Will of course only be there if you actually acquired a z-stack.

Best,

Nico


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[Sam Lord]

Yes, that is helpful. But what I meant is that under Image->Properties, the pixel size is saved but not the voxel depth. I can of course change that for every image from the number in the metadata, but it would be nicer it it automatically saved.